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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17312671_17316040_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17312671 - 17316040
Intron Length:
3370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCTTTCTTAAAA
Flanking Amino Acid:
DRLGPGMADLQPKDICAMVG
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82
0.72
0.8
73.1
36.6
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
69
0.59
1.4
71.75
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017757
17281534 - 17317216
35683