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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17317907_17319276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17317907 - 17319276
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCAGTGAT
5'SS Class:
major
3'SS Sequence:
TGTGTTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
ATCTCTTGACCT
Flanking Amino Acid:
EKVCHFLPESCVQFVEQYEP
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.3
66.4
39.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
78.9
0.65
1
72.2
42.7
Minor 5ss
32
-2.1
3.2
46.6
42.7
Minor BPS
56.8
0.29
1.8
74.82
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021054
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039987
17317438 - 17328749
11312