About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17352847_17352996_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17352847 - 17352996
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGGTC
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGGTACTGACCC
Flanking Amino Acid:
LAPLPQEDMKGGTLALLVTA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
65.1
39.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
77.8
0.63
0.7
72.7
25.4
Minor 5ss
36.2
-1.6
3.5
50
46.7
Minor BPS
48.2
-0.1
1.9
61.22
43.5

Associated Gene:

Gene:
VSIR
Ensembl Gene ID:
ENSAPLG00000022193
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044542
17352750 - 17355222
2473