Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17355924_17356068_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17355924 - 17356068

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CATCCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

GCTGCTCTGACA

Flanking Amino Acid:

GPGDCFFPTLDPVPDSPNSL

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.7

34.4

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

81.4

0.71

0.8

72.6

37.2

Minor 5ss

31.4

-2.1

3.2

35.2

41.4

Minor BPS

48.8

-0.1

1.8

59.4

40.7

Associated Gene:

Gene:

VSIR

Ensembl Gene ID:

ENSAPLG00000022193

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020711

17352750 - 17356463

3714