Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17363492_17363610_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17363492 - 17363610

Intron Length:

119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGCCA

5'SS Class:

major

3'SS Sequence:

CGCCCCCCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCCCAC

U12 Branch Point Sequence:

GGGGCCCCACCG

Flanking Amino Acid:

NGRVWYRIIRGNEHHNFRIN

Intron Amino Acid Position:

1050

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

63.2

42.9

Major BPS

42.9

-0.4

1.3

38.7

Major PPT

60.8

0.24

0.7

54.1

Minor 5ss

30.6

-2.2

3.2

31.7

42.2

Minor BPS

37.6

-1

37.85

44.2

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009324

17361709 - 17433984

72276