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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17363665_17364801_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17363665 - 17364801

Intron Length:

1137

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GTG|GCTCGCCCT

5'SS Class:

weak_major

3'SS Sequence:

GCAAAGGTGAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCTTCAC

U12 Branch Point Sequence:

TTCCTCGCAAAG

Flanking Amino Acid:

PAASSIVQARATDADEGVNG

Intron Amino Acid Position:

1032

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.2

0.19

1.4

53.7

44.4

Major BPS

59.7

0.24

1.3

65.3

41.6

Major PPT

-0.3

1.2

32.3

39.9

Minor 5ss

25.6

-2.8

40.7

Minor BPS

41.8

-0.7

2.2

49.8

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009324

17361709 - 17433984

72276