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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17364958_17365121_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17364958 - 17365121
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGTT
5'SS Class:
major
3'SS Sequence:
TCCCCCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAC
U12 Branch Point Sequence:
GTGACCAAACCC
Flanking Amino Acid:
ASYTLILEAIDNGPTGNRRT
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
73.3
37.5
Major BPS
48.4
-0.1
1
52.9
28.9
Major PPT
75.8
0.58
0.7
68.5
25.3
Minor 5ss
30.2
-2.3
3.7
47.1
48.3
Minor BPS
42
-0.6
2.1
52.71
44.3

Associated Gene:

Gene:
CDH23
Ensembl Gene ID:
ENSAPLG00000008813
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009324
17361709 - 17433984
72276