Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17365236_17365695_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17365236 - 17365695

Intron Length:

460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTACGGCAC

5'SS Class:

major

3'SS Sequence:

TTCCTTGCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACGACAT

U12 Branch Point Sequence:

AGGACGACATCC

Flanking Amino Acid:

LNAELSYFITGGNQDGKFSV

Intron Amino Acid Position:

942

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.1

44.1

Major BPS

48.5

-0

1.2

54.7

40.8

Major PPT

81.5

0.71

0.8

76.5

32.1

Minor 5ss

29.5

-2.3

3.4

32.7

42.4

Minor BPS

33.1

-1.3

2.2

39.78

38.8

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009324

17361709 - 17433984

72276