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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17373524_17374481_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17373524 - 17374481
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATACAA
U12 Branch Point Sequence:
CGTCCCCCATCC
Flanking Amino Acid:
SSHFRINARSGEITTTSLLD
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
53.4
0.09
1
62.6
33
Major PPT
71.7
0.49
0.9
64.6
36.5
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
42.9
-0.5
2
54.02
43.2

Associated Gene:

Gene:
CDH23
Ensembl Gene ID:
ENSAPLG00000008813
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009324
17361709 - 17433984
72276