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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17376196_17376275_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17376196 - 17376275
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGCA
Flanking Amino Acid:
FDITVSEGYGVISVNHPLDY
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
82.1
0.72
0.8
73.3
37.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
44.3
-0.4
2.1
52.8
45.1

Associated Gene:

Gene:
CDH23
Ensembl Gene ID:
ENSAPLG00000008813
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009324
17361709 - 17433984
72276