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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17376382_17376478_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17376382 - 17376478
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
CCGTCACGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTCCCGTCACG
Flanking Amino Acid:
PSVTQVVRLRASDEDSPPNN
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
37
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
55.4
0.12
0.9
46.8
35.6
Minor 5ss
23.6
-3
3.3
23.3
37.7
Minor BPS
44.5
-0.5
2.4
52.02
48.4

Associated Gene:

Gene:
CDH23
Ensembl Gene ID:
ENSAPLG00000008813
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009324
17361709 - 17433984
72276