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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17390780_17392359_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17390780 - 17392359

Intron Length:

1580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGAAAAA

U12 Branch Point Sequence:

AGGAGCCCGACT

Flanking Amino Acid:

YSAGFILTVKGTELNDDRTP

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

72.6

Major BPS

48.5

-0

1.2

53.7

38.6

Major PPT

81.2

0.7

76.1

25.8

Minor 5ss

32.6

-2

3.2

41.8

45.1

Minor BPS

38.5

-0.8

2.1

52.21

42.1

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025717

17382956 - 17430787

47832

ENSAPLT00000009324

17361709 - 17433984

72276

ENSAPLT00000032125

17386186 - 17433984

47799