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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17392473_17398384_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17392473 - 17398384

Intron Length:

5912

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTGTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

CTCTGCTCATGC

Flanking Amino Acid:

PRGIGYTIVSGNTNSIFALD

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

71.8

39.7

Major BPS

79.7

0.74

79.6

35.6

Major PPT

90.1

0.9

0.8

92.3

26.6

Minor 5ss

31.9

-2.1

2.9

43.6

43.3

Minor BPS

40.1

-0.7

2.3

49.6

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032125

17386186 - 17433984

47799

ENSAPLT00000025717

17382956 - 17430787

47832

ENSAPLT00000009324

17361709 - 17433984

72276