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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17398464_17403418_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17398464 - 17403418
Intron Length:
4955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GGGGCTCTAACA
Flanking Amino Acid:
STNIYENSPPGTTVRMITAV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
70.8
39.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
32.3
-2
3.6
48.7
47
Minor BPS
48.9
-0
1.8
57.37
42

Associated Gene:

Gene:
CDH23
Ensembl Gene ID:
ENSAPLG00000008813
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032125
17386186 - 17433984
47799
ENSAPLT00000025717
17382956 - 17430787
47832
ENSAPLT00000009324
17361709 - 17433984
72276