Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17406333_17428997_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17406333 - 17428997

Intron Length:

22665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCGCT

5'SS Class:

major

3'SS Sequence:

ATTTTCTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TTTTTTGTAAAT

Flanking Amino Acid:

NQPYSVRIPENTPVGTPIFI

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

69.8

39.5

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

84.9

0.78

0.8

77.5

36.2

Minor 5ss

37.6

-1.4

3.6

56.2

48.2

Minor BPS

59.7

0.38

2.1

84.29

36.6

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032125

17386186 - 17433984

47799

ENSAPLT00000025717

17382956 - 17430787

47832

ENSAPLT00000009324

17361709 - 17433984

72276