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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17429091_17429280_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17429091 - 17429280

Intron Length:

190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TGTGCACGAAGC

Flanking Amino Acid:

VEFSVSDSQGVIKGTVNIQV

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

69.8

0.49

37.5

Major PPT

67.4

0.39

0.8

60.8

29.2

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

40.2

-0.7

2.2

54.19

Associated Gene:

Gene:

CDH23

Ensembl Gene ID:

ENSAPLG00000008813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032125

17386186 - 17433984

47799

ENSAPLT00000025717

17382956 - 17430787

47832

ENSAPLT00000009324

17361709 - 17433984

72276