Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17482975_17483723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17482975 - 17483723

Intron Length:

749

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCGCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAT

U12 Branch Point Sequence:

CTCCCCCCAACC

Flanking Amino Acid:

RPPEGVPQAEVEWLRNEDVI

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

34.7

Major BPS

52.8

0.07

1.1

60.5

36.2

Major PPT

71.6

0.49

64.9

41.3

Minor 5ss

31.2

-2.2

3.2

38.8

46.5

Minor BPS

48.5

-0.1

1.9

61.18

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036004

17482726 - 17491869

9144