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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17484985_17486708_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17484985 - 17486708
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TGTCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCGGTCTCACCC
Flanking Amino Acid:
VTKEDLDEVTGLLVREVQIE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
70.4
0.46
1
65.8
35.9
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
45.5
-0.3
1.9
53.21
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017191
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036004
17482726 - 17491869
9144