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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17516008_17516168_R

Intron Information:

Intron Rank:
149806
Intron Class:
major
Intron Phase:
Intron Coordinates:
17516008 - 17516168
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CTGTGCTCAGGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62
41.3
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
36.4
-1.5
3.2
46.6
48.7
Minor BPS
38.7
-0.9
2.3
42.86
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028163
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033066
17512217 - 17521443
9227