Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17531240_17670504_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17531240 - 17670504

Intron Length:

139265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

GCTGCTAACCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TAGCTGCTAACC

Flanking Amino Acid:

WNLNVLQFPPSIPLPLFRKK

Intron Amino Acid Position:

493

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

49.7

-0

1.1

45.9

39.7

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

44.5

-0.4

2.3

57.35

41.1

Associated Gene:

Gene:

SGPL1

Ensembl Gene ID:

ENSAPLG00000003637

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029822

17531077 - 17692286

161210