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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17669349_17669443_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17669349 - 17669443
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
TCCCACGTAACC
Flanking Amino Acid:
KDLNAKTTGMGAIYGMAQSI
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
70.5
0.46
0.8
69.6
31.1
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
47.7
-0.2
2.2
60.61
44.6

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023614
17669208 - 17691547
22340
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000021846
17669208 - 17688261
19054
ENSAPLT00000003759
17668778 - 17692160
23383
ENSAPLT00000033957
17669208 - 17693835
24628