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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17669565_17670504_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17669565 - 17670504
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
TCTCCCTTCTCC
Flanking Amino Acid:
WNLNVLQFPPSIHLCITQLH
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
68.8
0.42
1
61.3
40.1
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
43.1
-0.5
3.6
67.52
44.1

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023614
17669208 - 17691547
22340
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000021846
17669208 - 17688261
19054
ENSAPLT00000003759
17668778 - 17692160
23383
ENSAPLT00000033957
17669208 - 17693835
24628