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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17671738_17672651_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17671738 - 17672651
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TGTTACTCACCA
Flanking Amino Acid:
IMDPIEEVAELAVKYKIPFH
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.8
0.65
0.9
72.5
37.8
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
51.4
0.04
2
69.78
42

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000021846
17669208 - 17688261
19054
ENSAPLT00000033957
17669208 - 17693835
24628
ENSAPLT00000003759
17668778 - 17692160
23383
ENSAPLT00000029822
17531077 - 17692286
161210
ENSAPLT00000023614
17669208 - 17691547
22340