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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17672751_17673201_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17672751 - 17673201
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACTT
5'SS Class:
major
3'SS Sequence:
TTTAAATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTCTCTTTAAAT
Flanking Amino Acid:
LTKTMEVDVQAMRRAISKNT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.6
44.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.7
0.65
0.9
74.8
39.7
Minor 5ss
42.4
-0.8
3.4
65.7
45.3
Minor BPS
71.5
0.75
1.4
80.63
41.5

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023614
17669208 - 17691547
22340
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000021846
17669208 - 17688261
19054
ENSAPLT00000033957
17669208 - 17693835
24628
ENSAPLT00000003759
17668778 - 17692160
23383
ENSAPLT00000029822
17531077 - 17692286
161210