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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17674189_17680499_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17674189 - 17680499
Intron Length:
6311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CCTTTCACGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCCTTTCACG
Flanking Amino Acid:
FHGGPSSCGAMTSGGTESIL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
70
0.45
1
65.6
34.8
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
63.8
0.29
1.8
72.56
40.3

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023614
17669208 - 17691547
22340
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000021846
17669208 - 17688261
19054
ENSAPLT00000033957
17669208 - 17693835
24628
ENSAPLT00000003759
17668778 - 17692160
23383
ENSAPLT00000029822
17531077 - 17692286
161210