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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17687956_17690333_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17687956 - 17690333
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAGCG
5'SS Class:
major
3'SS Sequence:
TCCCTTGGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTGTCTTAATG
Flanking Amino Acid:
TWCQTWLLTQDAISSYKEIL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
61.2
37.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68.4
0.41
1
64.4
36.6
Minor 5ss
31.4
-2.1
3.2
38.7
46.6
Minor BPS
65.7
0.36
1.5
66.07
42.7

Associated Gene:

Gene:
SGPL1
Ensembl Gene ID:
ENSAPLG00000003637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029822
17531077 - 17692286
161210
ENSAPLT00000022349
17669208 - 17691254
22047
ENSAPLT00000003759
17668778 - 17692160
23383