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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17707531_17707644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17707531 - 17707644
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
CTTTCCAGCAGA
Flanking Amino Acid:
PGGEELLRVQIQELKARQQP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
69.2
0.43
0.9
61.3
40.1
Minor 5ss
37.7
-1.4
3.2
52.9
44.2
Minor BPS
43.2
-0.5
2.3
60.88
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192