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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17708584_17708794_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17708584 - 17708794
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGGAT
U12 Branch Point Sequence:
CCTTCTGGATCT
Flanking Amino Acid:
PKLGFSSVNKIFGVQWQPTS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
58.9
0.22
1.5
59.3
47.1
Major PPT
86.7
0.83
0.7
79.5
32.5
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
44
-0.3
2.3
63.81
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192