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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17708935_17709027_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17708935 - 17709027
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATGAA
U12 Branch Point Sequence:
TCTCCCCTAACA
Flanking Amino Acid:
RSTTGIKISSRQQLELVSSS
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
55.3
0.13
1.1
47.4
36
Major PPT
74.7
0.56
0.8
69.6
29.6
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
67.9
0.56
1.7
77.88
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192