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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17709805_17710264_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17709805 - 17710264
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
CCAGTGATAACC
Flanking Amino Acid:
QLLKSAPEEMLPFIVEAAVA
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
57.2
41.8
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
78.7
0.64
0.7
69.4
31.3
Minor 5ss
32.8
-2
3.5
51.7
45
Minor BPS
40.7
-0.7
2.2
46.79
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192