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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17710755_17710872_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17710755 - 17710872
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CCAACCCGACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCAACCCGACCA
Flanking Amino Acid:
LCRQRLRGLQEVERGVEAIL
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
52.5
0.06
1
43.6
37.1
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
40.6
-0.7
1.9
46.53
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192