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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17711388_17711830_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17711388 - 17711830
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CGGTCCTTACAT
Flanking Amino Acid:
SSLRAPHHPAREIMKDIMGD
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
81.4
0.71
0.8
72.6
37.7
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
56.2
0.27
1.8
69.75
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192