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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17713509_17713736_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17713509 - 17713736
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGGG
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GTGACCAGACTT
Flanking Amino Acid:
EQELRTSIKTRGSLAIDFQA
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
58
47.1
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
31.2
-2.2
3.2
38.7
46.4
Minor BPS
43
-0.4
1.9
59.51
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004184
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004321
17705985 - 17714176
8192