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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17718278_17718965_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17718278 - 17718965
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ACCCCAAACAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
CTATCCTGGACA
Flanking Amino Acid:
IAHDHLRRLPAGEGGEQNFS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
47.5
-0.1
1
41.8
28.9
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
65.7
0.49
1.5
72.1
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005129
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005296
17718214 - 17720035
1822