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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17719857_17719933_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17719857 - 17719933
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCATCCTGACCC
Flanking Amino Acid:
VTWLLSVDLKGWIPSAVTDR
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.9
82.7
29.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
85.3
0.79
0.7
81.2
23.9
Minor 5ss
17.3
-3.8
3.5
25.7
37
Minor BPS
51.2
0.02
1.8
59.79
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005129
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005296
17718214 - 17720035
1822