About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17722872_17723189_R


Intron Information:

Intron Rank:
21

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
17722872 - 17723189

Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTAAGTGTC

5'SS Class:
major

3'SS Sequence:
CGTCCCTCTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CGCTGAT

U12 Branch Point Sequence:
CGTCCCTCTCCA

Flanking Amino Acid:
PKNPVSKISPREPCLGDKSI

Intron Amino Acid Position:
1052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.5
0.65
1
73.7
35.7

Major BPS
63.8
0.34
1.2
54.7
43.1

Major PPT
75.4
0.57
0.8
65.6
36.1

Minor 5ss
39.4
-1.2
3.3
58.2
40.5

Minor BPS
35.5
-1.1
3.5
54.04
43.9

Associated Gene:

Gene:
ADAMTS14

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

17709662 - 17743573
33912