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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17723301_17723579_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17723301 - 17723579
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
GCAGCCTGACCC
Flanking Amino Acid:
VRGCHVSVCPGKPSSITASA
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
46.6
-0.2
1.8
52.69
44.4

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912