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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17724003_17724559_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17724003 - 17724559
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CCGACCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTGCCACTAACA
Flanking Amino Acid:
RCNLQECSQPAWVAEEWGAC
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.4
60.6
44.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
69.4
0.44
0.9
61.4
34.8
Minor 5ss
36.4
-1.5
2.8
41.7
37.6
Minor BPS
48.8
-0
2
62.99
42.7

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912