About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17724693_17725530_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17724693 - 17725530
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CCCGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
GTGCCCACACCC
Flanking Amino Acid:
WSQCSKACGGGIQYTKYGCR
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
66.7
0.38
0.8
57
33.4
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
43.2
-0.5
2
54.22
43

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912