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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17727768_17727868_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17727768 - 17727868
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTCTCGTAACG
Flanking Amino Acid:
RSRSRSCTDPPPAYGGRHCP
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.4
58.5
46.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
37.1
-1.5
3.5
53
44.5
Minor BPS
49.1
-0.2
2.1
56.89
44.6

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912