About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17732988_17737633_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
17732988 - 17737633

Intron Length:
4646

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATC|GTAAGGCTT

5'SS Class:
major

3'SS Sequence:
TTTTCCCCCTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CCGTGAG

U12 Branch Point Sequence:
TTTTTTTTCCCC

Flanking Amino Acid:
QNYVLTLMNIVDEIYHDESL

Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.3
0.38
1.3
66.1
45

Major BPS
43
-0.4
1.6
34.4
42.4

Major PPT
83.9
0.76
0.7
81.9
22.9

Minor 5ss
38.2
-1.3
3.6
57.1
41.8

Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
ADAMTS14

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

17709662 - 17743573
33912