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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17737831_17738307_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17737831 - 17738307
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
GCCTCCCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCTTTTTCT
Flanking Amino Acid:
SAIRQHLRAEVPGVRVGELP
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
72.8
0.51
0.8
69.5
31.2
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
45.6
-0.2
3.6
79.44
43

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912