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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17738444_17742812_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17738444 - 17742812
Intron Length:
4369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTG
Flanking Amino Acid:
AVAISNCDGLAGLIRTDSTE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65
41.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.7
0.78
0.9
80.8
36.4
Minor 5ss
44.3
-0.6
2.8
53.9
44.3
Minor BPS
48.6
-0.2
1.7
53.46
43

Associated Gene:

Gene:
ADAMTS14
Ensembl Gene ID:
ENSAPLG00000005322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005517
17709662 - 17743573
33912