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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17753667_17753805_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17753667 - 17753805
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCGCCGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCAGGCTGACGG
Flanking Amino Acid:
VAFNYYLHEQYPLGFALSFS
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
58.8
0.2
1
53.1
31.1
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
32.5
-1.4
2.1
27.76
42.1

Associated Gene:

Gene:
PALD1
Ensembl Gene ID:
ENSAPLG00000006275
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022861
17748755 - 17757937
9183