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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17767206_17768788_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17767206 - 17768788
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTGAATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGAAT
U12 Branch Point Sequence:
TGTGCTTGAATT
Flanking Amino Acid:
MLSNTQFIENRVYDEEVEEP
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
62.3
0.31
1.4
73.3
39.1
Major PPT
73.8
0.54
0.9
70.3
40
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
62.4
0.47
1.5
77.3
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003356
17767101 - 17769243
2143