About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17777141_17777290_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17777141 - 17777290
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
CATTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TCAACATAAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
80.9
0.69
0.9
77.2
36.7
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
47.4
-0.3
2
54.23
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003344
17776559 - 17781474
4916