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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17777363_17779528_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17777363 - 17779528
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GTCTCTTTTACA
Flanking Amino Acid:
MKSFLAFLLAM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
85.1
0.79
0.8
79.3
32.7
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
64.9
0.46
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003344
17776559 - 17781474
4916
ENSAPLT00000037990
17776559 - 17781474
4916