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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17790289_17792202_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17790289 - 17792202
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCACAATAATT
Flanking Amino Acid:
MKTFLACLLVL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
73
0.52
1
73.3
37.2
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
52.3
0.15
1.9
75.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018946
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047561
17789468 - 17794306
4839