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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_178064_178399_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178064 - 178399
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTGTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCTTTCCCATTG
Flanking Amino Acid:
RNNPEQFMNISQKIRFQGYP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
71.5
38.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
80.2
0.68
0.8
73.8
31.3
Minor 5ss
36.9
-1.5
3.3
51.3
39.7
Minor BPS
40.3
-0.8
2
43.16
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306