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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17840422_17840510_F

Intron Information:

Intron Rank:
140471
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
17840422 - 17840510
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCAGGGC
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGCATCTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
48.9
41.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
24.2
-3
3.4
33.3
42
Minor BPS
43.1
-0.5
2.1
58.32
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039526
17839636 - 17840753
1118